Gendoo
Gene, Disease Features Ontology-based Overview System
Ver. 2.204 ('10-03-09)
Gendoo provides keywords including diseases, drugs and biological phenomena related to genes and diseases of interests.
Gene → ...
Disease (OMIM) → ...
Keywords (MeSH) → ...
Examples
News, Announcements, Discussion, ...
- Gendoo Reports: The blog of Gendoo
- Ver. 2.204 ('10-03-09): Japanese disease terms become acceptable.
- Ver. 2.203 ('10-02-26): The 2010 version of allelic and non-allelic heterogeneity data are available.
- Ver. 2.202 ('10-02-08): "Check All" button is added to candidate genes/diseases lists.
- Ver. 2.201 ('09-09-17): Japanese translations of MeSH terms are added to MeSH tree.
- Ver. 2.2 ('09-06-24): New interface and link to lifesciencedb.jp are available. Japanese translations column is also added.
Association data
- score.[gene|omim].[type].[category].tab
- *.A.tab: Anatomy
- *.B.tab: Organisms
- *.C.tab: Diseases
- *.D.tab: Drugs and chemicals
- *.G.tab: Biological phenomena
- *.S.tab: Substance Names
Association files are tab-separated text data containing Gene/OMIM ID, score (information gain), p-value and MeSH ID.
- Gene names and aliases (2009/1/8 ver.)
- Disease names and aliases (2009/1/8 ver.)
- MeSH: IDs, terms and tree IDs (2009 ver.)
- Substance Names: IDs and terms (2008 ver.)
- All file list
Further data
- Allelic heterogeneity: The list of genes and their related diseases (2010-1-8) --- Archive: 2008 2009
- Non-allelic heterogeneity:
The list of diseases and their related genes
(2010-1-8) --- Archive:
2008
2009
- MeSH tree
- Anatomy (+日本語)
- Organisms (+日本語)
- Diseases (+日本語)
- Chemicals and Drugs (+日本語)
- Biological Sciences (+日本語)
References
Nakazato, T., Takinaka, T., Mizuguchi, H., Matsuda, H., Bono, H., and Asogawa, M.,
BioCompass: A novel functional inference tool that utilizes MeSH hierarchy to analyze groups of genes,
In Silico Biology,
8(1): 53-61, 2008.
[PubMed]
[Full Text]
Nakazato, T., Bono, H., Matsuda, H., and Takagi, T.,
Gendoo: Functional profiling of gene and disease features using MeSH vocabulary,
Nucleic Acids Research,
37(Suppl. 2) (Web Server Issue):W166-W169
2009.
[PubMed]
[Full Text]
この作品は、クリエイティブ・コモンズ・ライセンスの下でライセンスされています。
This work is licensed under a Creative Commons Attribution 2.1 Japan License.
Developed by Takeru Nakazato < nakazato at dbcls rois ac jp >